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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20293672_20294481_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20293672 - 20294481
Intron Length:
810

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGTTCA
5'SS Class:
major
3'SS Sequence:
CTTTCTACTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAA
U12 Branch Point Sequence:
TTGCCTTTAAAC
Flanking Amino Acid:
LPTYVAENGFICNMMNAPAD
Intron Amino Acid Position:
358

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.63
1
72.4
32.9
Major BPS
78
0.7
0.9
79.6
29.1
Major PPT
83.4
0.75
0.8
78
29.1
Minor 5ss
43.1
-0.8
2.8
56.6
41.9
Minor BPS
67.8
0.54
1.4
73.1
37.6

Associated Gene:

Gene:
PDE6C
Ensembl Gene ID:
ENSAPLG00000014049
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014789
20276152 - 20304910
28759