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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20294549_20294660_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20294549 - 20294660
Intron Length:
112

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCC|GTGAGTATT
5'SS Class:
major
3'SS Sequence:
TCTCTCTCTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
AATCACCTAATT
Flanking Amino Acid:
LHGKEEIKVIPSPPADHWCL
Intron Amino Acid Position:
335

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.6
0.46
1.3
78.2
37.9
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
74.2
0.54
1
74.7
27.9
Minor 5ss
38.1
-1.3
3
56
41.5
Minor BPS
51.3
0.12
1.8
71.56
38.6

Associated Gene:

Gene:
PDE6C
Ensembl Gene ID:
ENSAPLG00000014049
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014789
20276152 - 20304910
28759