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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20294886_20295405_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20294886 - 20295405
Intron Length:
520

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATATTC
5'SS Class:
strong_major
3'SS Sequence:
ATTATTTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTAAT
U12 Branch Point Sequence:
TGTGTATTATTT
Flanking Amino Acid:
VGLLDMTKEKEFYDEWPIRL
Intron Amino Acid Position:
289

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
77.9
31
Major BPS
79.3
0.73
1.1
77.9
34.9
Major PPT
81.2
0.7
0.9
73.4
41.2
Minor 5ss
42.6
-0.8
3.1
59.6
45
Minor BPS
48.3
-0
1.9
69.12
42.2

Associated Gene:

Gene:
PDE6C
Ensembl Gene ID:
ENSAPLG00000014049
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014789
20276152 - 20304910
28759