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Intron Name: Anas_platyrhynchos_platyrhynchos_6_20296171_20304430_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

20296171 - 20304430

Intron Length:

8260

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGTGAG

5'SS Class:

strong_major

3'SS Sequence:

TTATTTTTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TCTTTTTTAATT

Flanking Amino Acid:

KFFNIPDVKKNNHFSDFLDK

Intron Amino Acid Position:

161

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

94.8

1.06

0.7

81.4

32.7

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

93.1

0.97

0.7

92.4

Minor 5ss

-2.1

3.1

39.6

46.4

Minor BPS

78.6

0.98

86.64

33.8

Associated Gene:

Gene:

PDE6C

Ensembl Gene ID:

ENSAPLG00000014049

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014789

20276152 - 20304910

28759