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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20297315_20311786_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
20297315 - 20311786
Intron Length:
14472

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
TGTCTCTCACCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTGAT
U12 Branch Point Sequence:
TGTCTCTCACCA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
0.9
73.9
33
Major BPS
72.4
0.56
1.2
63.1
44.4
Major PPT
74.1
0.54
0.9
67.1
39.2
Minor 5ss
35.8
-1.6
2.8
40.4
40
Minor BPS
49.9
-0
1.8
65.67
40.5

Associated Gene:

Gene:
RBP4
Ensembl Gene ID:
ENSAPLG00000015498
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046952
20297235 - 20319875
22641