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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20317153_20317800_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20317153 - 20317800
Intron Length:
648

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAAACTT
5'SS Class:
major
3'SS Sequence:
CATTTCCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
CCTTTCTCATTT
Flanking Amino Acid:
KVKENFDKNRYSGTWYAMAK
Intron Amino Acid Position:
64

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1.1
68.8
42.1
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
83.5
0.75
0.8
77.4
30.9
Minor 5ss
36.8
-1.5
3.4
48.6
47
Minor BPS
49.6
0.05
1.8
66.98
44.7

Associated Gene:

Gene:
RBP4
Ensembl Gene ID:
ENSAPLG00000015498
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046952
20297235 - 20319875
22641
ENSAPLT00000030734
20297235 - 20319875
22641
ENSAPLT00000016169
20313109 - 20319875
6767
ENSAPLT00000047372
20316985 - 20324301
7317