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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20317938_20318096_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20317938 - 20318096
Intron Length:
159

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTGACTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGAAT
U12 Branch Point Sequence:
TTCTCTCTGACT
Flanking Amino Acid:
ATAKGRVRLFNNWDVCADMI
Intron Amino Acid Position:
109

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
90.7
21.1
Major BPS
74.6
0.61
1.4
84
34.5
Major PPT
76.6
0.6
0.9
70.1
35.1
Minor 5ss
47.8
-0.2
2.8
67.5
37.3
Minor BPS
65.8
0.58
1.7
83.75
37.4

Associated Gene:

Gene:
RBP4
Ensembl Gene ID:
ENSAPLG00000015498
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046952
20297235 - 20319875
22641
ENSAPLT00000030734
20297235 - 20319875
22641
ENSAPLT00000016169
20313109 - 20319875
6767
ENSAPLT00000047372
20316985 - 20324301
7317