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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20318204_20319558_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20318204 - 20319558
Intron Length:
1355

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TGGTTTCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTAAC
U12 Branch Point Sequence:
TCTATGTAACTT
Flanking Amino Acid:
WGVASFLQKGNDDHWVVDTD
Intron Amino Acid Position:
145

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
83.3
27.9
Major BPS
65.7
0.39
1.2
67.4
36.7
Major PPT
81.9
0.72
0.9
73.5
41.8
Minor 5ss
34.6
-1.7
2.8
44.2
37
Minor BPS
40
-0.6
2.4
58.96
45.2

Associated Gene:

Gene:
RBP4
Ensembl Gene ID:
ENSAPLG00000015498
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047372
20316985 - 20324301
7317
ENSAPLT00000046952
20297235 - 20319875
22641
ENSAPLT00000030734
20297235 - 20319875
22641
ENSAPLT00000016169
20313109 - 20319875
6767