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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20325722_20329340_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20325722 - 20329340
Intron Length:
3619

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTTTTC
5'SS Class:
major
3'SS Sequence:
TCTTTTACTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAC
U12 Branch Point Sequence:
TTCTCTTTTACT
Flanking Amino Acid:
IVVSYSKILQITKASRRSLN
Intron Amino Acid Position:
218

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
75.3
35.6
Major BPS
74.2
0.6
1
67
39.4
Major PPT
86.5
0.82
0.7
81.8
28.5
Minor 5ss
43.8
-0.7
3
61.8
43
Minor BPS
73.5
0.82
1.6
87.8
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015798
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016464
20325314 - 20330422
5109