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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20329470_20329900_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20329470 - 20329900
Intron Length:
431

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGGGCG
5'SS Class:
major
3'SS Sequence:
TCTTTGCAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TCTTCTTTATTC
Flanking Amino Acid:
VVRLPAAAGEEVQICTLVWP
Intron Amino Acid Position:
175

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1.1
64.1
39.3
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
70.7
0.47
1
66.4
38.7
Minor 5ss
28.1
-2.5
3.6
38
47.1
Minor BPS
66.8
0.51
1.5
73.5
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015798
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016464
20325314 - 20330422
5109