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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20340972_20343699_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20340972 - 20343699
Intron Length:
2728

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGTACT
5'SS Class:
strong_major
3'SS Sequence:
TCTCCTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAAAGAT
U12 Branch Point Sequence:
AGTCCCTCACTA
Flanking Amino Acid:
REQITRLEPLKLQESGCVEP
Intron Amino Acid Position:
395

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
78.9
34.5
Major BPS
59.6
0.24
1.1
55.4
40.4
Major PPT
87.6
0.85
0.7
80
31.9
Minor 5ss
44.6
-0.6
2.5
57.8
40.7
Minor BPS
48.8
-0
1.8
60.6
39.3

Associated Gene:

Gene:
CEP55
Ensembl Gene ID:
ENSAPLG00000015799
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016479
20340765 - 20353550
12786