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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20349605_20352168_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20349605 - 20352168
Intron Length:
2564

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCACT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTGTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CTATTTTAAACA
Flanking Amino Acid:
NKASNSQASQEAVTNSTGSS
Intron Amino Acid Position:
154

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
84.4
33.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
88.8
0.87
0.7
83.9
31
Minor 5ss
42
-0.9
2.9
58.6
45.7
Minor BPS
58.2
0.25
1.7
66.93
40.2

Associated Gene:

Gene:
CEP55
Ensembl Gene ID:
ENSAPLG00000015799
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016479
20340765 - 20353550
12786