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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20362223_20373612_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20362223 - 20373612
Intron Length:
11390

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGTACT
5'SS Class:
major
3'SS Sequence:
CACTTCATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
TATACTTGAATT
Flanking Amino Acid:
VKDFETIGQNKLIGSASIAL
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
79.9
32.8
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
77.4
0.62
0.9
73.8
35.1
Minor 5ss
46.2
-0.4
2.5
61.3
37
Minor BPS
65
0.55
1.4
78.99
37

Associated Gene:

Gene:
MYOF
Ensembl Gene ID:
ENSAPLG00000015881
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030603
20354241 - 20426380
72140
ENSAPLT00000016672
20354241 - 20426380
72140
ENSAPLT00000034286
20354241 - 20426071
71831
ENSAPLT00000032502
20354241 - 20426071
71831