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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20383152_20383903_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20383152 - 20383903
Intron Length:
752

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTACATCAG
5'SS Class:
major
3'SS Sequence:
AACTTCTGTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TGTTTTGAAACT
Flanking Amino Acid:
KIYRAEDIPQMDDAFAQTVK
Intron Amino Acid Position:
371

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.3
0.34
1.1
56.1
43
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
71.6
0.49
1
65.8
40
Minor 5ss
33.6
-1.9
3.2
40.1
40.3
Minor BPS
49.1
0.01
2.3
75.46
41.9

Associated Gene:

Gene:
MYOF
Ensembl Gene ID:
ENSAPLG00000015881
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032502
20354241 - 20426071
71831
ENSAPLT00000030603
20354241 - 20426380
72140
ENSAPLT00000016672
20354241 - 20426380
72140
ENSAPLT00000034286
20354241 - 20426071
71831