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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20385145_20385993_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20385145 - 20385993
Intron Length:
849

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAA
U12 Branch Point Sequence:
TTATGTTTAACT
Flanking Amino Acid:
CEKIKLAVVDWDRLTKNDIV
Intron Amino Acid Position:
443

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
76.2
28.3
Major BPS
68.7
0.47
0.9
67.9
25
Major PPT
91.3
0.93
0.6
88.5
21
Minor 5ss
35.2
-1.7
2.8
40.3
40.2
Minor BPS
73
0.8
1.7
88.57
36.5

Associated Gene:

Gene:
MYOF
Ensembl Gene ID:
ENSAPLG00000015881
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032502
20354241 - 20426071
71831
ENSAPLT00000030603
20354241 - 20426380
72140
ENSAPLT00000016672
20354241 - 20426380
72140
ENSAPLT00000034286
20354241 - 20426071
71831