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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20386077_20390169_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20386077 - 20390169
Intron Length:
4093

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTGAT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCCTGTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
ATTAACAAAACT
Flanking Amino Acid:
KIASSGGEVEANTGETEVGF
Intron Amino Acid Position:
471

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
1.1
81.4
32.7
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
74.1
0.54
1
74.3
36.5
Minor 5ss
39.9
-1.1
3.3
57.8
46.8
Minor BPS
47.8
-0
2.1
73.59
42.5

Associated Gene:

Gene:
MYOF
Ensembl Gene ID:
ENSAPLG00000015881
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034286
20354241 - 20426071
71831