About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20395361_20396424_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20395361 - 20396424
Intron Length:
1064

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTAGTACT
5'SS Class:
strong_major
3'SS Sequence:
AAATAATCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
CCAACTTTTACT
Flanking Amino Acid:
LDKLLQLSEEPQNSMPDVII
Intron Amino Acid Position:
766

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
1.1
85.6
30.6
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
60.4
0.23
1
51.5
41.7
Minor 5ss
34.7
-1.7
2.6
44.5
42.8
Minor BPS
52.3
0.15
1.7
65.03
45.4

Associated Gene:

Gene:
MYOF
Ensembl Gene ID:
ENSAPLG00000015881
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034286
20354241 - 20426071
71831
ENSAPLT00000032502
20354241 - 20426071
71831
ENSAPLT00000030603
20354241 - 20426380
72140
ENSAPLT00000016672
20354241 - 20426380
72140