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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20397725_20399580_F

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20397725 - 20399580
Intron Length:
1856

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTCCA
5'SS Class:
major
3'SS Sequence:
TATACTCAAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TGTTCCTAAAGT
Flanking Amino Acid:
EGTFSVFAEMYENQALLFGK
Intron Amino Acid Position:
862

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
66
39.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
64.9
0.33
1
59.6
40.4
Minor 5ss
40.7
-1
2.7
47.8
43
Minor BPS
65.5
0.56
2
84.57
42.1

Associated Gene:

Gene:
MYOF
Ensembl Gene ID:
ENSAPLG00000015881
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030603
20354241 - 20426380
72140
ENSAPLT00000016672
20354241 - 20426380
72140
ENSAPLT00000034286
20354241 - 20426071
71831
ENSAPLT00000032502
20354241 - 20426071
71831