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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20408460_20409019_F

Intron Information:

Intron Rank:
36
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20408460 - 20409019
Intron Length:
560

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTT|GTACGTTGC
5'SS Class:
major
3'SS Sequence:
CTTTCACTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAC
U12 Branch Point Sequence:
TAACCTTTCACT
Flanking Amino Acid:
FPSSVLFMKVLLPKEELYSP
Intron Amino Acid Position:
1360

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.5
0.37
1.1
59
41
Major BPS
75.8
0.64
0.9
75.6
25.3
Major PPT
80.6
0.69
0.7
78.3
29.3
Minor 5ss
42
-0.9
3.1
57.8
41.4
Minor BPS
59.5
0.38
1.8
75.6
40.8

Associated Gene:

Gene:
MYOF
Ensembl Gene ID:
ENSAPLG00000015881
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030603
20354241 - 20426380
72140
ENSAPLT00000016672
20354241 - 20426380
72140
ENSAPLT00000034286
20354241 - 20426071
71831
ENSAPLT00000032502
20354241 - 20426071
71831