Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20409186_20409806_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

20409186 - 20409806

Intron Length:

621

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAATAGA

5'SS Class:

strong_major

3'SS Sequence:

CTTTGGCTTACAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TAATAAA

U12 Branch Point Sequence:

GTTGCCTTAATA

Flanking Amino Acid:

TKEDIAPQMKVSLLSAAPCQ

Intron Amino Acid Position:

1415

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.9

0.87

0.9

80.4

34.2

Major BPS

70.8

0.52

70.6

31.6

Major PPT

79.8

0.67

0.9

72.2

37.9

Minor 5ss

34.4

-1.8

2.8

42.8

Minor BPS

76.8

0.84

1.3

80.01

36.3

Associated Gene:

Gene:

MYOF

Ensembl Gene ID:

ENSAPLG00000015881

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030603

20354241 - 20426380

72140

ENSAPLT00000016672

20354241 - 20426380

72140

ENSAPLT00000034286

20354241 - 20426071

71831

ENSAPLT00000032502

20354241 - 20426071

71831