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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20413346_20414610_F

Intron Information:

Intron Rank:
39
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20413346 - 20414610
Intron Length:
1265

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGTAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTTTAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTCTTTTAAG
Flanking Amino Acid:
PLLAAQLTEKEEEIVDWWSK
Intron Amino Acid Position:
1445

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
77.6
33.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
85.6
0.8
0.9
91.1
21.3
Minor 5ss
38.5
-1.3
3.4
55.5
48.6
Minor BPS
62.7
0.26
1.8
72.54
40

Associated Gene:

Gene:
MYOF
Ensembl Gene ID:
ENSAPLG00000015881
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032502
20354241 - 20426071
71831
ENSAPLT00000030603
20354241 - 20426380
72140
ENSAPLT00000034286
20354241 - 20426071
71831