Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20415519_20416247_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

20415519 - 20416247

Intron Length:

729

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAATTTC

5'SS Class:

strong_major

3'SS Sequence:

TATTACTTTTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCTTGAT

U12 Branch Point Sequence:

TTTATCTTGATT

Flanking Amino Acid:

DDPSVVGEFKGSFKIYALPD

Intron Amino Acid Position:

1516

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.3

0.9

0.8

84.7

26.5

Major BPS

83.8

0.84

73.6

41.8

Major PPT

80.5

0.69

0.8

78.2

35.6

Minor 5ss

44.1

-0.6

2.9

61.1

43.8

Minor BPS

74.1

0.84

1.2

87.25

31.8

Associated Gene:

Gene:

MYOF

Ensembl Gene ID:

ENSAPLG00000015881

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032502

20354241 - 20426071

71831

ENSAPLT00000030603

20354241 - 20426380

72140

ENSAPLT00000016672

20354241 - 20426380

72140

ENSAPLT00000034286

20354241 - 20426071

71831