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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20416604_20417542_F

Intron Information:

Intron Rank:
42
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20416604 - 20417542
Intron Length:
939

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACAAAT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTATATTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
ACAGTGTTAACT
Flanking Amino Acid:
VPNTLNPVFGRMYELSCFLP
Intron Amino Acid Position:
1598

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1.1
80.7
33.7
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
79.3
0.66
0.8
78.5
34
Minor 5ss
40.7
-1
3
57.6
46.6
Minor BPS
49.1
0.01
2.1
66.17
44.7

Associated Gene:

Gene:
MYOF
Ensembl Gene ID:
ENSAPLG00000015881
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032502
20354241 - 20426071
71831
ENSAPLT00000030603
20354241 - 20426380
72140
ENSAPLT00000016672
20354241 - 20426380
72140
ENSAPLT00000034286
20354241 - 20426071
71831