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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20417714_20418246_F

Intron Information:

Intron Rank:
43
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20417714 - 20418246
Intron Length:
533

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCCTAAAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAA
U12 Branch Point Sequence:
TTTTCCTAAAAG
Flanking Amino Acid:
SHCGIPQQYCISGVNTWRDQ
Intron Amino Acid Position:
1655

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
1
80
34.8
Major BPS
78.5
0.71
0.9
69.7
37.1
Major PPT
67.3
0.39
1.1
68.8
36.3
Minor 5ss
38.3
-1.3
3.1
54.8
42.5
Minor BPS
68.4
0.44
1.8
76.73
40.6

Associated Gene:

Gene:
MYOF
Ensembl Gene ID:
ENSAPLG00000015881
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030603
20354241 - 20426380
72140
ENSAPLT00000016672
20354241 - 20426380
72140
ENSAPLT00000034286
20354241 - 20426071
71831
ENSAPLT00000032502
20354241 - 20426071
71831