About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20418714_20418941_F

Intron Information:

Intron Rank:
45
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20418714 - 20418941
Intron Length:
228

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTATGA
5'SS Class:
major
3'SS Sequence:
TTTACTAATACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TCTTCTTTACTA
Flanking Amino Acid:
YSTFQPNIPQGKLQMWVDVF
Intron Amino Acid Position:
1752

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.49
1.1
61.7
39.7
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
76.3
0.59
1
70.4
39
Minor 5ss
36.3
-1.6
3.2
48.5
47
Minor BPS
67
0.53
1.6
74.34
38.4

Associated Gene:

Gene:
MYOF
Ensembl Gene ID:
ENSAPLG00000015881
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032502
20354241 - 20426071
71831
ENSAPLT00000030603
20354241 - 20426380
72140
ENSAPLT00000016672
20354241 - 20426380
72140
ENSAPLT00000034286
20354241 - 20426071
71831