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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20420026_20420321_F

Intron Information:

Intron Rank:
48
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20420026 - 20420321
Intron Length:
296

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTAAAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TGTTTTTTAAAA
Flanking Amino Acid:
AEQLCIVSKKEHFWSLDKTE
Intron Amino Acid Position:
1861

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
100
1.18
0.6
100
0
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
73.7
0.53
1
71.9
37.1
Minor 5ss
41.7
-0.9
2.9
59.7
44.8
Minor BPS
71
0.66
1.3
76.89
33.6

Associated Gene:

Gene:
MYOF
Ensembl Gene ID:
ENSAPLG00000015881
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030603
20354241 - 20426380
72140
ENSAPLT00000016672
20354241 - 20426380
72140
ENSAPLT00000034286
20354241 - 20426071
71831
ENSAPLT00000032502
20354241 - 20426071
71831