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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20420422_20424194_F

Intron Information:

Intron Rank:
49
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20420422 - 20424194
Intron Length:
3773

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGATTT
5'SS Class:
strong_major
3'SS Sequence:
CTATGTCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TATTTTTTAATC
Flanking Amino Acid:
NDKFSLDDYLGFVELDLHKT
Intron Amino Acid Position:
1894

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
0.9
81.9
32.3
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
79.4
0.66
0.9
73.1
37
Minor 5ss
44.4
-0.6
3.2
66.3
44.6
Minor BPS
76.7
0.82
1
78.69
30.3

Associated Gene:

Gene:
MYOF
Ensembl Gene ID:
ENSAPLG00000015881
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032502
20354241 - 20426071
71831
ENSAPLT00000030603
20354241 - 20426380
72140
ENSAPLT00000016672
20354241 - 20426380
72140
ENSAPLT00000034286
20354241 - 20426071
71831