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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20424389_20425288_F

Intron Information:

Intron Rank:
50
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20424389 - 20425288
Intron Length:
900

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTATGATTA
5'SS Class:
major
3'SS Sequence:
GTATTTTCTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TCTTGTTTCATG
Flanking Amino Acid:
VEKDGSRILAGKVEMTLEVV
Intron Amino Acid Position:
1959

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1
70.8
35.7
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
71.2
0.48
1.1
72.1
38
Minor 5ss
48.1
-0.2
2.8
65.2
46
Minor BPS
47.6
-0.3
2.2
57.98
44.9

Associated Gene:

Gene:
MYOF
Ensembl Gene ID:
ENSAPLG00000015881
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032502
20354241 - 20426071
71831
ENSAPLT00000030603
20354241 - 20426380
72140
ENSAPLT00000016672
20354241 - 20426380
72140
ENSAPLT00000034286
20354241 - 20426071
71831