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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20425892_20426344_F

Intron Information:

Intron Rank:
52
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20425892 - 20426344
Intron Length:
453

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGAATT
5'SS Class:
strong_major
3'SS Sequence:
CTCACTCCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
CTCTCCTCACTC
Flanking Amino Acid:
FVAVLLYSLPNYLSMKIVKP
Intron Amino Acid Position:
2045

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
84.9
32.3
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
71.3
0.48
0.8
64.5
30.9
Minor 5ss
39.9
-1.1
3.2
59.5
44.6
Minor BPS
50.7
0
1.9
61.86
44.3

Associated Gene:

Gene:
MYOF
Ensembl Gene ID:
ENSAPLG00000015881
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030603
20354241 - 20426380
72140
ENSAPLT00000016672
20354241 - 20426380
72140