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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20497668_20497998_R

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
20497668 - 20497998
Intron Length:
331

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGTTC
5'SS Class:
strong_major
3'SS Sequence:
CCTGTGCAATAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
CCTGTTTTATCC
Flanking Amino Acid:
QGNGEQLNMQELKESATELL
Intron Amino Acid Position:
285

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.88
0.8
79.1
30.7
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
50
0
1.1
53.8
39.8
Minor 5ss
35.8
-1.6
3.4
49.2
47.3
Minor BPS
49
-0.1
1.7
56.41
43.2

Associated Gene:

Gene:
CYP26A1
Ensembl Gene ID:
ENSAPLG00000002859
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002903
20496173 - 20499263
3091