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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20503500_20506441_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20503500 - 20506441
Intron Length:
2942

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACCAGA
5'SS Class:
major
3'SS Sequence:
CCTTCCCTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTCAA
U12 Branch Point Sequence:
TGACATTCAAAC
Flanking Amino Acid:
GKEFTMQELKESAIELIFAA
Intron Amino Acid Position:
284

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.2
68.9
43.8
Major BPS
70.6
0.51
1
73.3
31.3
Major PPT
77.6
0.62
0.7
68.9
31.6
Minor 5ss
44.3
-0.6
2.7
58.2
46
Minor BPS
44.8
-0.4
1.7
52.74
37.5

Associated Gene:

Gene:
CYP26C1
Ensembl Gene ID:
ENSAPLG00000021874
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037364
20501825 - 20509168
7344