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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20508553_20508669_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20508553 - 20508669
Intron Length:
117

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCCTC
5'SS Class:
strong_major
3'SS Sequence:
CTTCTGCTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAC
U12 Branch Point Sequence:
CCTCTCTTCCCC
Flanking Amino Acid:
IGDLHRQRRKILARVFCRTA
Intron Amino Acid Position:
140

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
72.2
39.5
Major BPS
77.3
0.68
1
79.3
29.4
Major PPT
73.3
0.52
0.8
65.4
36.2
Minor 5ss
37
-1.5
3.2
50.1
46.5
Minor BPS
37.7
-0.9
3.5
54.35
44.1

Associated Gene:

Gene:
CYP26C1
Ensembl Gene ID:
ENSAPLG00000021874
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037364
20501825 - 20509168
7344