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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20510143_20510854_R

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20510143 - 20510854
Intron Length:
712

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTCCC
5'SS Class:
major
3'SS Sequence:
TTCTGTTCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATGAT
U12 Branch Point Sequence:
AGTTCTTTATGA
Flanking Amino Acid:
VVKQLRSLVNGLPFLTVLF*
Intron Amino Acid Position:
807

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
64.2
40.1
Major BPS
84.6
0.86
1
74
41.2
Major PPT
82.1
0.72
0.8
80.5
31.5
Minor 5ss
41.7
-0.9
2.7
51.1
39.7
Minor BPS
54
0.12
1.9
66.16
40.5

Associated Gene:

Gene:
EXOC6
Ensembl Gene ID:
ENSAPLG00000003365
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041910
20509114 - 20602059
92946
ENSAPLT00000039448
20509114 - 20602059
92946
ENSAPLT00000021661
20509114 - 20599957
90844