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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20510968_20511816_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20510968 - 20511816
Intron Length:
849

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TGCTTTTTATTT
Flanking Amino Acid:
NPSTALTLLEKMRDSSKKNN
Intron Amino Acid Position:
778

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
79
35.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
88.7
0.87
0.7
81.4
36.2
Minor 5ss
38
-1.4
3.3
49.5
41.1
Minor BPS
57.7
0.32
1.6
71.36
40.7

Associated Gene:

Gene:
EXOC6
Ensembl Gene ID:
ENSAPLG00000003365
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003512
20510835 - 20602314
91480