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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20511452_20511816_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20511452 - 20511816
Intron Length:
365

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
GTGTGTTTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGCGAAT
U12 Branch Point Sequence:
CCTGCCGCGAAT
Flanking Amino Acid:
NPSTALTLLEKVHRGMRDSS
Intron Amino Acid Position:
765

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
79
35.3
Major BPS
46.8
-0.2
1.4
53
41.4
Major PPT
79.2
0.66
1
72.9
42.2
Minor 5ss
38
-1.4
3.3
49.5
41.1
Minor BPS
40.2
-0.6
2.3
55.82
46.6

Associated Gene:

Gene:
EXOC6
Ensembl Gene ID:
ENSAPLG00000003365
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039448
20509114 - 20602059
92946
ENSAPLT00000023078
20510835 - 20579225
68391
ENSAPLT00000047408
20510835 - 20602314
91480
ENSAPLT00000021661
20509114 - 20599957
90844
ENSAPLT00000041910
20509114 - 20602059
92946
ENSAPLT00000039725
20510835 - 20602314
91480