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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20535509_20543036_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20535509 - 20543036
Intron Length:
7528

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
CCTTTCCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
ATATTTTTAACC
Flanking Amino Acid:
QFNLDVIQCELFASSEPVPG
Intron Amino Acid Position:
716

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
1
80.1
34.8
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
86
0.81
0.7
80.5
24.8
Minor 5ss
37.5
-1.4
2.8
47
41.7
Minor BPS
75.5
0.78
1.1
77.09
32.2

Associated Gene:

Gene:
EXOC6
Ensembl Gene ID:
ENSAPLG00000003365
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039448
20509114 - 20602059
92946
ENSAPLT00000023078
20510835 - 20579225
68391
ENSAPLT00000047408
20510835 - 20602314
91480
ENSAPLT00000021661
20509114 - 20599957
90844
ENSAPLT00000041910
20509114 - 20602059
92946
ENSAPLT00000003512
20510835 - 20602314
91480
ENSAPLT00000039725
20510835 - 20602314
91480