About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20543179_20549801_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20543179 - 20549801
Intron Length:
6623

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTCTACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAA
U12 Branch Point Sequence:
TCTATCTTAAAA
Flanking Amino Acid:
NNNNDHAAMSGKVAQTACMS
Intron Amino Acid Position:
669

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
78.4
37.9
Major BPS
77.8
0.69
1
78.2
31.8
Major PPT
75.5
0.57
0.8
70.3
35
Minor 5ss
35.6
-1.6
2.7
43.2
43.8
Minor BPS
67.2
0.54
1.4
72.98
38.7

Associated Gene:

Gene:
EXOC6
Ensembl Gene ID:
ENSAPLG00000003365
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039725
20510835 - 20602314
91480
ENSAPLT00000023078
20510835 - 20579225
68391
ENSAPLT00000021661
20509114 - 20599957
90844
ENSAPLT00000047408
20510835 - 20602314
91480
ENSAPLT00000003512
20510835 - 20602314
91480
ENSAPLT00000041910
20509114 - 20602059
92946