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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20552936_20556846_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20552936 - 20556846
Intron Length:
3911

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAGTTT
5'SS Class:
major
3'SS Sequence:
TATTTGTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
CACTATTTATTT
Flanking Amino Acid:
ARLYGLSTFKDARHAAEGEI
Intron Amino Acid Position:
599

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1
74.5
36.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
87.2
0.84
0.8
84.8
35.4
Minor 5ss
48.1
-0.2
3.2
72.7
44.5
Minor BPS
48.1
-0
1.8
61.26
43.3

Associated Gene:

Gene:
EXOC6
Ensembl Gene ID:
ENSAPLG00000003365
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023078
20510835 - 20579225
68391
ENSAPLT00000021661
20509114 - 20599957
90844
ENSAPLT00000041910
20509114 - 20602059
92946
ENSAPLT00000003512
20510835 - 20602314
91480
ENSAPLT00000039725
20510835 - 20602314
91480
ENSAPLT00000039448
20509114 - 20602059
92946