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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20552936_20558059_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20552936 - 20558059
Intron Length:
5124

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TATTTGTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
CACTATTTATTT
Flanking Amino Acid:
IKKPHIGLTEDARHAAEGEI
Intron Amino Acid Position:
554

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
99.2
1.16
0.6
97
9.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
87.2
0.84
0.8
84.8
35.4
Minor 5ss
46.1
-0.4
2.8
66.9
44.4
Minor BPS
48.1
-0
1.8
61.26
43.3

Associated Gene:

Gene:
EXOC6
Ensembl Gene ID:
ENSAPLG00000003365
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047408
20510835 - 20602314
91480