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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20558172_20559179_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20558172 - 20559179
Intron Length:
1008

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TTATACTACATG
Flanking Amino Acid:
SLKFSESLHRSSTEIDDMLR
Intron Amino Acid Position:
516

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.8
87.9
29.3
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
93.4
0.98
0.7
92.3
26.6
Minor 5ss
49.8
-0
2.8
73.2
43.7
Minor BPS
45.2
-0.5
2.2
56.85
44.8

Associated Gene:

Gene:
EXOC6
Ensembl Gene ID:
ENSAPLG00000003365
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023078
20510835 - 20579225
68391
ENSAPLT00000047408
20510835 - 20602314
91480
ENSAPLT00000021661
20509114 - 20599957
90844
ENSAPLT00000041910
20509114 - 20602059
92946
ENSAPLT00000003512
20510835 - 20602314
91480
ENSAPLT00000039725
20510835 - 20602314
91480
ENSAPLT00000039448
20509114 - 20602059
92946