About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20561846_20562935_R

Intron Information:

Intron Rank:
13
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
20561846 - 20562935
Intron Length:
1090

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTATT
5'SS Class:
strong_major
3'SS Sequence:
ACAAATTCACCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AACAAAT
U12 Branch Point Sequence:
TTTTTTTCCACT
Flanking Amino Acid:
TLLKKWSGLFRDIFEADNYS
Intron Amino Acid Position:
444

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
1
92
25
Major BPS
60.7
0.27
1
65.3
28.1
Major PPT
57.8
0.18
1.1
48.4
43.8
Minor 5ss
38
-1.4
2.8
51.9
44.6
Minor BPS
58.1
0.34
2
83.3
38.2

Associated Gene:

Gene:
EXOC6
Ensembl Gene ID:
ENSAPLG00000003365
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023078
20510835 - 20579225
68391
ENSAPLT00000047408
20510835 - 20602314
91480
ENSAPLT00000021661
20509114 - 20599957
90844
ENSAPLT00000041910
20509114 - 20602059
92946
ENSAPLT00000003512
20510835 - 20602314
91480
ENSAPLT00000039725
20510835 - 20602314
91480
ENSAPLT00000039448
20509114 - 20602059
92946