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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20565874_20566242_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20565874 - 20566242
Intron Length:
369

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTATTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAA
U12 Branch Point Sequence:
ATTGCTTTATTT
Flanking Amino Acid:
GYRRYFSQIVGFFVVEDHIL
Intron Amino Acid Position:
347

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
87.9
29.3
Major BPS
70.7
0.51
0.9
61.7
35.7
Major PPT
79.5
0.66
0.8
78
35.1
Minor 5ss
45.7
-0.5
2.8
59
45.5
Minor BPS
61.2
0.43
1.7
77.64
39.7

Associated Gene:

Gene:
EXOC6
Ensembl Gene ID:
ENSAPLG00000003365
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039448
20509114 - 20602059
92946
ENSAPLT00000023078
20510835 - 20579225
68391
ENSAPLT00000047408
20510835 - 20602314
91480
ENSAPLT00000021661
20509114 - 20599957
90844
ENSAPLT00000041910
20509114 - 20602059
92946
ENSAPLT00000003512
20510835 - 20602314
91480
ENSAPLT00000039725
20510835 - 20602314
91480