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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20571295_20572603_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20571295 - 20572603
Intron Length:
1309

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
ACTTTTAAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CTACTTTTAAAA
Flanking Amino Acid:
DRIGETAMKQAQQQKTFSTT
Intron Amino Acid Position:
229

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.8
1.06
0.8
81.8
38.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
68
0.41
1
63.8
40.2
Minor 5ss
37.8
-1.4
3
49.5
46.7
Minor BPS
56.6
0.2
1.4
62.32
37.7

Associated Gene:

Gene:
EXOC6
Ensembl Gene ID:
ENSAPLG00000003365
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003512
20510835 - 20602314
91480
ENSAPLT00000041910
20509114 - 20602059
92946
ENSAPLT00000039448
20509114 - 20602059
92946
ENSAPLT00000023078
20510835 - 20579225
68391
ENSAPLT00000021661
20509114 - 20599957
90844
ENSAPLT00000047408
20510835 - 20602314
91480