About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20572809_20580340_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20572809 - 20580340
Intron Length:
7532

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
AATCTCTTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTGCTTTTAATC
Flanking Amino Acid:
SKLKEQMNVKRYYSALKTME
Intron Amino Acid Position:
160

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
77.5
32.9
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
76.1
0.59
0.8
70.4
35.2
Minor 5ss
26.6
-2.7
3
30.5
43.3
Minor BPS
67.4
0.52
1.2
70.78
35

Associated Gene:

Gene:
EXOC6
Ensembl Gene ID:
ENSAPLG00000003365
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039448
20509114 - 20602059
92946
ENSAPLT00000021661
20509114 - 20599957
90844
ENSAPLT00000047408
20510835 - 20602314
91480
ENSAPLT00000003512
20510835 - 20602314
91480
ENSAPLT00000041910
20509114 - 20602059
92946
ENSAPLT00000039725
20510835 - 20602314
91480