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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20580387_20581281_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20580387 - 20581281
Intron Length:
895

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTATGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTGTTTTTATGC
Flanking Amino Acid:
VVEKLQLCLPVLEMYSKLKE
Intron Amino Acid Position:
145

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
78.4
29.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
85.2
0.79
0.9
81.4
35.3
Minor 5ss
28.5
-2.5
3
35.5
41.2
Minor BPS
51.3
0.02
1.9
64.86
41.7

Associated Gene:

Gene:
EXOC6
Ensembl Gene ID:
ENSAPLG00000003365
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039725
20510835 - 20602314
91480
ENSAPLT00000039448
20509114 - 20602059
92946
ENSAPLT00000021661
20509114 - 20599957
90844
ENSAPLT00000047408
20510835 - 20602314
91480
ENSAPLT00000003512
20510835 - 20602314
91480
ENSAPLT00000041910
20509114 - 20602059
92946