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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20581373_20581478_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
20581373 - 20581478
Intron Length:
106

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
ACAACACTCCAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTCTTTTAAAA
Flanking Amino Acid:
NRRLQDAGKEVIAQTEEIIR
Intron Amino Acid Position:
115

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
82.1
24.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
49
-0
1.1
42.3
36.9
Minor 5ss
27.3
-2.6
2.7
30.6
42.8
Minor BPS
69.4
0.6
1.3
77.65
32.3

Associated Gene:

Gene:
EXOC6
Ensembl Gene ID:
ENSAPLG00000003365
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039448
20509114 - 20602059
92946
ENSAPLT00000021661
20509114 - 20599957
90844
ENSAPLT00000047408
20510835 - 20602314
91480
ENSAPLT00000003512
20510835 - 20602314
91480
ENSAPLT00000041910
20509114 - 20602059
92946
ENSAPLT00000039725
20510835 - 20602314
91480