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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20583015_20601937_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20583015 - 20601937
Intron Length:
18923

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCATC
5'SS Class:
strong_major
3'SS Sequence:
TTGTATTTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTGTATTTAACA
Flanking Amino Acid:
SFELPLGTTLRSVYDDQPNA
Intron Amino Acid Position:
41

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
77.9
36.9
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
77.6
0.62
1
73.6
40.4
Minor 5ss
50.2
0.01
2.5
68.8
42.2
Minor BPS
73.4
0.73
1.4
80.14
35.8

Associated Gene:

Gene:
EXOC6
Ensembl Gene ID:
ENSAPLG00000003365
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039725
20510835 - 20602314
91480
ENSAPLT00000039448
20509114 - 20602059
92946
ENSAPLT00000003512
20510835 - 20602314
91480
ENSAPLT00000047408
20510835 - 20602314
91480
ENSAPLT00000041910
20509114 - 20602059
92946