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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20673990_20674297_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20673990 - 20674297
Intron Length:
308

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGCATA
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTGTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
CTTTTCTGAAAA
Flanking Amino Acid:
TKEIRENADQDLLEEEEGMQ
Intron Amino Acid Position:
986

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.76
1
80.8
33.6
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
81.7
0.71
0.8
80.5
31.5
Minor 5ss
44.7
-0.6
2.9
58
40.7
Minor BPS
63.5
0.42
1.6
73.17
38.4

Associated Gene:

Gene:
KIF11
Ensembl Gene ID:
ENSAPLG00000004051
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004221
20672571 - 20687804
15234