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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20674926_20675956_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20674926 - 20675956
Intron Length:
1031

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGCATA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTTAA
U12 Branch Point Sequence:
TTCTTGTTAACT
Flanking Amino Acid:
EKKQLLCSQQKNKENCDRAV
Intron Amino Acid Position:
860

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
1
78.2
38.2
Major BPS
72.1
0.55
1.2
63.7
43.9
Major PPT
97
1.06
0.5
96.7
11.4
Minor 5ss
41.9
-0.9
3.1
57.3
47
Minor BPS
68.1
0.65
2.1
86.99
39.2

Associated Gene:

Gene:
KIF11
Ensembl Gene ID:
ENSAPLG00000004051
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004221
20672571 - 20687804
15234