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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_20677468_20678433_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20677468 - 20678433
Intron Length:
966

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACACAC
5'SS Class:
major
3'SS Sequence:
TCTGTTTTCAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAA
U12 Branch Point Sequence:
AAGTATTTAACT
Flanking Amino Acid:
VKKYSAVADKMECHKKEVDT
Intron Amino Acid Position:
667

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1.2
66
40.1
Major BPS
79.5
0.73
0.9
70
36.9
Major PPT
72.5
0.51
1
73.8
34.7
Minor 5ss
37.8
-1.4
3.1
50.8
45.8
Minor BPS
66.5
0.6
1.5
76.64
39.6

Associated Gene:

Gene:
KIF11
Ensembl Gene ID:
ENSAPLG00000004051
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004221
20672571 - 20687804
15234